PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_086780_wqjj.t1
Common NameSOVF_086780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 455aa    MW: 51638.1 Da    PI: 4.9133
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_086780_wqjj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.6e-14106165155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  s+n    k+ ++++lg ++++ +Aa+ ++ a++k++g
  Sp_086780_wqjj.t1 106 SIYRGVTRHRWTGRFEAHLWDkSSWNSiqnKKgRQVYLGAYDSEVDAARTYDLAALKYWG 165
                        57*******************777788866447**********99*************98 PP

2AP251.13.5e-16208259155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg+f + eeAa+a++ a+ +++g
  Sp_086780_wqjj.t1 208 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFSSQEEAAAAYDLAAIEYRG 259
                        89****99**********99966...3.6*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15106174IPR016177DNA-binding domain
CDDcd000187.26E-21106174No hitNo description
PfamPF008472.6E-11106165IPR001471AP2/ERF domain
SMARTSM003804.7E-25107179IPR001471AP2/ERF domain
PROSITE profilePS5103219.269107173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-15107174IPR001471AP2/ERF domain
PRINTSPR003673.6E-6108119IPR001471AP2/ERF domain
CDDcd000185.92E-16208269No hitNo description
SuperFamilySSF541717.85E-18208269IPR016177DNA-binding domain
PfamPF008471.1E-11208259IPR001471AP2/ERF domain
SMARTSM003801.5E-26209273IPR001471AP2/ERF domain
PROSITE profilePS5103218.373209267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-18209267IPR001471AP2/ERF domain
PRINTSPR003673.6E-6249269IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MKKRSHSQLQ LQSQSQPQTT PRRRRLPPPP LSAIANAADS FVVSPSSPSS SSSSSSCVVD  60
YNQQINVEEE DEEEEKPKPK RTRRKRAPIH PKTEKCANAP TTRRSSIYRG VTRHRWTGRF  120
EAHLWDKSSW NSIQNKKGRQ VYLGAYDSEV DAARTYDLAA LKYWGPETTL NFPIEKYTKE  180
VEEMQNATKE EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTF  240
SSQEEAAAAY DLAAIEYRGP NAVTNFDISN YIGRVKNVLP KVESEEASTE QTVKQEIKQQ  300
KEEEQQQDEA PIKQRNLADV LQQDQDEDEQ MGIPPQLEQH PAMLGMDDKE NPWNFCLDTG  360
GYDPLLVPDV PFDQDAGLLD LFNQTSFEEN IDMMFEGEGN LINIDDTFFD GTDDIGCQTS  420
EDLDKKMDIL PKTEDNSLSF SSSPSSITSL VLCQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
115KKRSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694876.10.0PREDICTED: ethylene-responsive transcription factor WRI1
SwissprotQ6X5Y61e-119WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A0K9RCH90.0A0A0K9RCH9_SPIOL; Uncharacterized protein
STRINGAT3G54320.11e-117(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-93AP2 family protein